I’m having this issue as well. Any time I’m in landscape mode and begin typing in the console row, the extended keyboard pops up and blocks the view of the input row. I turned off shortcuts as a workaround, but that also prevented 1Password from prompting to fill passwords, which is a dealbreaker for me. Would love to see an update, but will just deal with it for the time being.
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RE: Problem with Pythonista on 2018 iPad pro